G2G module introduction

G2G module is similar to C2C module, but it provides genetic information on the transcriptional regulation of 46 species. G2G module predicted the putative gene regulatory networks (GRNs) between transcription factors (TFs) and their candidate targets, promoting the understanding of the gene transcriptional regulation on the cell type level. Each of the 46 species comprises GRNs of each TF, GO (Gene Ontology) term enrichment analysis on candidate target genes of each regulon, and a table summarizing all detailed information about TF and target genes on certain cell types.

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Info
  • Rds: SP108_Ara_chloropterus
  • Classification: Birds
  • CommonName: Red-and-green macaw
  • LatinName: Ara chloropterus
  • System: Circulatory system
  • Tissue: PBMC
  • Journal: Clin Transl Med
  • Title: Screening of cell-virus, cell-cell, gene-gene cross-talks among kingdoms of life at single cell resolution
  • Institution: BGI-Shenzhen, Shenzhen 518083, China
  • Reference: ——
  • Tech: 10x Genomics Chromium
  • CellNum: 2684
  • DataSource: PRJNA731625
  • SP_ID: SP108
  • View cell atlas in ShinyCell
CellAHR(+)ARID3A(+)ARNT(+)ATF1(+)ATF2(+)ATF3(+)
HLJG_1_GTGTTAATGTCTAGGCCACG 0.023562348304616346 0.059466934875534325 0.013728171681043552 0.016879456041873037 0.05730028424759238 0.04140121240202324
HLJG_1_TGGAGAGAGGAAGTAAGCGT 0.015788335375964243 0.04425446316318833 0.018397737101713538 0.016848882855780168 0.07070128547791778 0.047328082165334566
HLJG_1_TGATCTAGTGCAGTCCAGGA 0.027227068464181867 0.05280362081971335 0.031138228487271196 0.018631299604994437 0.060863985405795254 0.03345689022742191
HLJG_1_GCTTATTCTTTTGATCTTAA 0.01922476149280273 0.07690051127315396 0.030717441615821586 0.017017035379290946 0.05987760383522125 0.041015097107996445
HLJG_1_CCTTGACGGCCGTATCGCCT 0.023742580443611373 0.023510183555443803 0.01980620426864904 0.014283792542588448 0.064220864621781 0.035353681609328544
HLJG_1_CTCTGTCTCCGTTGCGCCGG 0.02141157811260904 0.05996982650238874 0.02367510578114407 0.015179586895109513 0.06242310466250901 0.033384493609791885
HLJG_1_CACCTCCAATATCCACTAAG 0.03567394804508207 0.06286145335680161 0.020314655071650655 0.01750926367538614 0.053482033006660726 0.047226726900652535
HLJG_1_TGGCTCAAGGAGGTTAGGAG 0.034196044505322855 0.045763138043751574 0.011524884868036562 0.023015494490711864 0.063563276908065 0.037759662535233024
HLJG_1_CCGACACTCTTTCTCACTCC 0.032706125489630644 0.051630207023719725 0.017486032213572714 0.018738305756319476 0.05916698485427008 0.04518031584231051
HLJG_1_AAGATCAATTGTCCAGACGA 0.06743085093600558 0.057287737825831866 0.030974589148374126 0.01944760367367404 0.0667769717025158 0.029525753890111587
HLJG_1_TGCGCACATGCTCTCCATAG 0.02125537692548002 0.053767496437850976 0.011665147158519766 0.014513091438284966 0.055025242883203936 0.02870043244912931
HLJG_1_AAGCGATTCCGAACGAATTC 0.08035950303991542 0.046978459475316404 0.022997171377141922 0.021480720548849835 0.0668087904628569 0.030725124522182325
HLJG_1_ACGTATACAGGCAACAGAAC 0.023790642347343377 0.048068058000167634 0.02058349112841013 0.020233334556260776 0.058520003394001104 0.031516660874937256
HLJG_1_CCGTAGCTCAGTAACGACGC 0.06203590224208781 0.034448076439527284 0.027286859761086565 0.02520147729635201 0.06433753340969836 0.03497239275647709
HLJG_1_GAGAATTAGTCTTGTCTAGT 0.1007737966500853 0.04044086832620904 0.01745681090305538 0.029075099974318525 0.0541290144669297 0.03679437430016603
HLJG_1_AATCCGCACTTACAGTACGC 0.09642419436233869 0.03872265526778979 0.03685976108656521 0.030264396913331132 0.061898095116880915 0.03378508822734468
HLJG_1_CGTAGCGGCAGCAACTATTG 0.07775214476245404 0.059592657782247926 0.017947728919746594 0.024009123038730113 0.05570404310381401 0.024880304258851692
HLJG_1_CACTTAGCTAGTGTCACGAG 0.09265133491937616 0.051462576481434916 0.03540453982280197 0.020401487079771557 0.0583556064655721 0.035044789374107106
HLJG_1_CTTGAGGAAGCGATCACGAT 0.02704683632518684 0.022085323946022965 0.012232040582556046 0.015690159102860427 0.05902910355945866 0.03906521487316113
HLJG_1_CATTCTGGTCATGCGAGCGT 0.0520750726936294 0.027156147850138295 0.019829581317062906 0.018658815472478017 0.049340291035594584 0.040834105563921384
HLJG_1_TAAGGAGAAGTACGAAGTGC 0.07573354480570975 0.013158997569357136 0.019028917408887954 0.024571669662838903 0.06311251113656612 0.02580215452334067
HLJG_1_CCGCAGGAGCGCGTACAACT 0.006752697474346959 0.1875366691811248 0.029466769525679688 0.026014724046422327 0.022495863561155658 0.17546526892930228
HLJG_1_TCCTGGTCGGCTTCGGCCGG 0.09470598130391945 0.07602045092615875 0.029963531804474367 0.02659255726357755 0.06637923719825209 0.03394194756554307
HLJG_1_AGGTCGCAACCACCGCTAGT 0.044421214524307306 0.09525605565334004 0.019175023961474625 0.021343141211431927 0.060795044758389545 0.04213724468126182
HLJG_1_GCTTAATCAAGACTCTCCAA 0.05612428808305097 0.03038303578912078 0.020951679640928537 0.024547211113964608 0.052739595265368464 0.03435460828603421
HLJG_1_TGTAAGAGCTTGTGTGTAAC 0.018587941268353638 0.09152627608750315 0.023885499216868878 0.0317196805713517 0.037307496499936366 0.14692410903895903
HLJG_1_TTCGCATAATTATTACTCTC 0.05077740129286521 0.0820551504484117 0.037467564345325756 0.015286593046434555 0.05330172669806118 0.04458183713656898
HLJG_1_CCGAGACGTAGTTGTTCTCT 0.07846105784250114 0.02267203084401978 0.01933281903826823 0.023776766824424308 0.05634572143735947 0.02366886752384262
HLJG_1_ACGGCCAGCGTGGAGCTCAG 0.06715449498954654 0.034531891710669685 0.030144703929681837 0.028512553350209732 0.05741164990878622 0.03428945133016719
HLJG_1_CTCGAACTGACTCGATTGGT 0.08682382909187032 0.035705305506663315 0.017205507632606306 0.022939061525479695 0.06027533833948496 0.02990462952237538
HLJG_1_CACGGAGACCACGACAATAT 0.0747122293514046 0.037968317827508175 0.012769712696074994 0.02591077521370657 0.060445038394637475 0.03017249700760647
HLJG_1_ACTATGGCTGACGGTACCTC 0.047857640641145796 0.0546894644204174 0.04271571171423896 0.021101613041298258 0.054664630266004835 0.04472663037182903
HLJG_1_CTATCGCTGACCGAATCAGT 0.09917573835099608 0.07354790042745789 0.023003015639245387 0.022688361399518166 0.057655593738067966 0.0372118614618325
HLJG_1_GATGAACTCTATACTCCTAC 0.12034700694494509 0.026862794401139888 0.019905556724407976 0.023403773954091305 0.05410780196003564 0.04083169234333372
HLJG_1_ACGACCGACGACGCCTCAGT 0.0697017758873429 0.0 0.036649367650840405 0.025809883699600102 0.06042912901446693 0.029175836904899805
HLJG_1_CATTGTTATATATCGCGCCA 0.07794439237738207 0.0508339619478669 0.04242934287116908 0.022709762629783175 0.06484133044843239 0.028809027375574347
HLJG_1_ATCGAGCGAAGTCAGTACCA 0.0858385600653642 0.040063699606068225 0.029303130186782617 0.02552555306893642 0.0602223070722498 0.03854878566740028
HLJG_1_GATTCCTCAACTAGGCCACG 0.12070747122293514 0.02430642863129662 0.03882927741543353 0.01581856648445048 0.05670633405455857 0.036306903741457196
HLJG_1_ATAGAACTGCGTTCGCGCGC 0.09169009684473602 0.02770094711256391 0.028806367907987938 0.024324026855486663 0.06019579143863222 0.034226707594887835
HLJG_1_CGTTCAATAACGAATATAGG 0.06435488909715714 0.0155896404324868 0.026527105687635878 0.019878685597583497 0.06701561240507403 0.025046816479400748
HLJG_1_GCGCAGCACCATTATCTAGC 0.11078268810227573 0.019277512362752495 0.03465647427355822 0.027916376221398784 0.05861015654830088 0.02694843430248272
HLJG_1_GATAAGGAGTTGGTATTGTC 0.05724172734482013 0.021708155225882157 0.032733712041517635 0.02003460884665713 0.07659836239446778 0.041533939534344956
HLJG_1_CGCCTGGAGAGTCTCACAGT 0.11990243433542402 0.020660464336602128 0.023482245131729668 0.024501351334825304 0.054988120996139325 0.020717498745125296
HLJG_1_ATCTCGCTGCTGGACGTGAC 0.07528897219618869 0.05502472550498701 0.019630876405545037 0.021593841337393452 0.06316023927707777 0.0351195992123248
HLJG_1_CGATAAGCACAATGCCAGTT 0.02409102924566842 0.03754924147179616 0.01707108960422657 0.014601753677954287 0.04602053370667345 0.043027723078111126
HLJG_1_CCGTAGCTCAGTCAGTACCA 0.08150097325355057 0.017140222948621237 0.010788507842999742 0.02280453950667107 0.053429001739425566 0.03597629252094676
HLJG_1_TTCCGTCCTCGTCGCGATTC 0.10180712758032345 0.059466934875534325 0.0260128106225308 0.026977779408347703 0.0735278520215519 0.03757143132939496
HLJG_1_GGCGTCAGTACATATTAGGA 0.08854204215028957 0.06789036962534574 0.021337400939757348 0.0231010994117719 0.06930656314963303 0.037513514035290935
HLJG_1_CTGCACTCTGGACATCGGTG 0.04844639896186288 0.051336853574721314 0.027181663043224162 0.023678932628927125 0.06622544652327012 0.04510550600409282
HLJG_1_TAATCCGTCGAGTAGTTACG 0.08855405762622258 0.04546978459475316 0.021372466512378147 0.017689645473334067 0.07169297017521531 0.030754083169234333
HLJG_1_CCGGTCTCCGTAACATAGCA 0.1020834835267825 0.04840331908473724 0.024072515604179816 0.03015739076200609 0.06329281744516567 0.03544538399165991
HLJG_1_AGAGCAGCGGGGCCTGCACA 0.06795953187705765 0.04220098902019948 0.026462818804497745 0.022055496447395777 0.06970429765389674 0.027435904861191553
HLJG_1_CACGGATCGATTGTGGCATC 0.07055487467858602 0.02187578576816696 0.021267269794515743 0.020542123735798754 0.06262462347800263 0.04482798563651106
HLJG_1_TGAGGCGGCCATGATCATTA 0.0654963593107923 0.0 0.032733712041517635 0.022520208876007388 0.05099486657333164 0.03793824085872041
HLJG_1_GTGCGAACATGATAATGATG 0.06436690457309013 0.03859693236107619 0.030004441639198635 0.02273727849726676 0.06600801832760596 0.03637447391791189
HLJG_1_AAGATGGCCTACGGCGAGGC 0.07409944007882152 0.054815187327131004 0.022640671388830445 0.014069780239938365 0.04777586865215731 0.03555639213869261
HLJG_1_AGGCACACCTGTCTCACAGT 0.10828346910821138 0.02304919956416059 0.031541482572410406 0.024590013574494626 0.06701030927835051 0.037588323873508626
HLJG_1_TTACGGTTAACTTGTAGCAT 0.11656213202604955 0.009974017265945856 0.019005540360474086 0.017185187902801727 0.05406537694624751 0.028456697169774895
HLJG_1_TGCGAGCTCTGCTGCTCTTC 0.13557061495205824 0.05649149274997905 0.022132220585828834 0.027185677073779214 0.05606465572101311 0.03256399860998494
HLJG_1_CAGATCGGTCTTGAGCCTGA 0.08084012207723548 0.01797837566004526 0.033680482502279264 0.024024409631776548 0.05382673624368928 0.03913037182902815
HLJG_1_ACCATCGGAACTATCGCCTT 0.06293706293706294 0.029461067806554355 0.030664843256890385 0.020918173924741046 0.0471182809384413 0.03993638750530908
HLJG_1_TGACCATCCTAATTCCAACC 0.052916156008939515 0.022881569021875787 0.020589335390513594 0.021612185249049173 0.049303169148529974 0.034127765550793464
HLJG_1_GAACGCCGTGTACTCAGGAA 0.09219474683392209 0.017894560388902858 0.03421815461579821 0.02424147925303592 0.055831318145178395 0.02933269624309819
HLJG_1_GATTCGGAAGGATAATGATG 0.09950015620118713 0.021289078870170144 0.052066531079785865 0.019475119541157625 0.05489266471511603 0.033850245183211704
HLJG_1_ATAGAGAGCCTATGGCATAG 0.07390719246389349 0.021205263599027743 0.021781564859620826 0.020297538247055803 0.07097174494081711 0.03455731881539828
HLJG_1_AAGATGGCCTCGCACTGGAT 0.07564943647417874 0.027449501299136703 0.020209458353788252 0.023214220200315515 0.06258750159093801 0.031709718521950654
HLJG_1_ACGACGACTGTTCTCCTGTA 0.13653185302669837 0.06839326125220015 0.021097786193515208 0.029894461361607415 0.05922001612150524 0.039859164446503725
HLJG_1_CCATCGTGACGGAGTACGTA 0.06318938793165597 0.05309697426871176 0.016019122425602543 0.022104413545144367 0.0578624156802851 0.028775242287347003
HLJG_1_GTTAACAACTCATATTAGGA 0.08961141950832673 0.03000586706897997 0.017351614185192977 0.01631079478054567 0.06759895634466082 0.032168230433607475
HLJG_1_AGAGCTGTAGATAGCTGGAT 0.08058779708264244 0.07778057162014919 0.020636089487341327 0.01942925976201832 0.06624665903016419 0.03291391559519673
HLJG_1_GCCAGTGACGACGAGGCCAT 0.08929901713406868 0.05615623166540944 0.031015498983098393 0.023718677770847855 0.06286326418056086 0.03162766902196996
HLJG_1_GCTTCCTAACACTGGTAAGA 0.12993535673948045 0.0006705221691392172 0.030290810482268508 0.021560210832691298 0.061049594841118326 0.026320996949689177
HLJG_1_GGAGTACGTACCGTGCAACC 0.0929757527695672 0.020534741429888526 0.018608130537438344 0.030236881045847548 0.06057231343600187 0.030495868566353914
HLJG_1_CAGAGTGCCAAGCGATCCAT 0.04544252997861245 0.07773866398457799 0.02190429436379363 0.027411918650866444 0.04293941708031055 0.06177362060311209
HLJG_1_AACAGAGACTCCTGCGAACA 0.10100209069281234 0.03360992372810326 0.02951936788461089 0.0256937055924472 0.05008272877688685 0.032855998301092704
HLJG_1_AGGATTCTACACAGTCCACC 0.08926297070626968 0.03834548654764898 0.022722491058278983 0.027216250259872083 0.0625821984642145 0.03410845978609213
HLJG_1_GAGGCAAGTCTGGTATTGTC 0.034316199264652875 0.13037465426200653 0.018865278069990884 0.03228528451406978 0.03180815408765008 0.1481138267886791
HLJG_1_CCATAAGGAGCTTCCGATAA 0.02951000889145219 0.06789036962534574 0.019075671505715687 0.029983123601276737 0.031299053922192524 0.12384648055909495
HLJG_1_TGAGGCCAATCTAAGAGTCC 0.06368202244490904 0.04396110971418993 0.01935035182457863 0.030206307859754682 0.061935217003945525 0.031060562183868105
HLJG_1_ATCCTGGAGTTGTGTAGCCG 0.09638814793453969 0.0155896404324868 0.035182457862870234 0.02557447016668501 0.05944274744389292 0.03415913741843314
HLJG_1_CGTACTTATTTGCTGCAGTA 0.05104174176339125 0.02263012320844858 0.018532155130093275 0.012106981692776167 0.04359170166730304 0.03969989188771767
HLJG_1_TGAACCGGTGAATTCGAAGG 0.04327974431067214 0.06525018858436007 0.02960703181616289 0.032141590539433294 0.04263183573034661 0.0338285261979227
HLJG_1_CTGTGCTAGGCGGACTGAGG 0.0796265590080023 0.02300729192858939 0.023102368095004325 0.022523266194616674 0.06466632726655636 0.027462450287655895
HLJG_1_CCGAATCAGTCGCCTCTCGG 0.10789897387835533 0.009806386723661051 0.032049933375412024 0.024828484426019003 0.05359870179457808 0.03235404841885787
HLJG_1_GCCGCGACTTAGAATTCAGT 0.08711220051426237 0.011398876875366691 0.033844121841176335 0.032172163725526164 0.05019939756480421 0.03708154755009846
HLJG_1_CTGGTTCGAGAATCTACAAG 0.04539446807488045 0.03260414047439444 0.030694064567407718 0.02363307284978782 0.058154087650078484 0.04432120931310089
HLJG_1_ATTAGTGGTCTTGAAGAAGC 0.119770264100161 0.02430642863129662 0.017141220749468174 0.018875885093737388 0.058901828518094265 0.027679640140545966
HLJG_1_ATCTGAGATGGTCGGACCTC 0.07597385432436979 0.027449501299136703 0.0234413352970054 0.02042900294725514 0.05250095456281023 0.03516303718290281
HLJG_1_TAATTGAACGCTTCGATGGT 0.0816091125369476 0.018565082558042074 0.024364728709353158 0.018790280172677355 0.06276780789953756 0.03327589868334685
HLJG_1_CATCAGTTGGGCGCGCCGAG 0.11516833681782135 0.03469952225295449 0.01877761413843888 0.03024605300167541 0.05067667896992067 0.032057222286574774
HLJG_1_TCGTTATAGGCGTTCAATAA 0.06286497008146492 0.03587293604894812 0.02632840077611801 0.020266965060962934 0.05555025242883204 0.04005222209351712
HLJG_1_GTAGTGCCAACCGAATCAGT 0.05929637372936342 0.030844019780403988 0.026018654884634267 0.014039207053845495 0.03878176572907386 0.036927101432487744
HLJG_1_ACGGCACTCCTCCTGATCAA 0.019417009107730757 0.023258737742016596 0.020729597680996796 0.028998667009086352 0.07104068558822281 0.03228647824240318
HLJG_1_AGACTCGACGCGAATATAGG 0.030747602912551367 0.12253792641019194 0.021015966524066673 0.03251764072837558 0.025407280132366043 0.13373827174794395
HLJG_1_GCAAGACCGTGCACTTCACG 0.06393434743950208 0.0009219679825664236 0.029069359702643943 0.023740079001112864 0.06537694624750753 0.037800687285223365
HLJG_1_GTCTACCTTCTTCTCACTCC 0.05668901545190205 0.03055066633140558 0.027877130233536714 0.025550011617810717 0.06125111365661194 0.039682999343604
HLJG_1_ACCTCGTGAATCGATGCGCG 0.061867685579025784 0.04601458385717878 0.023102368095004325 0.025916889850925145 0.0556669212167494 0.03842329819684158
HLJG_1_ATGATGTTGCCCGTGCAACC 0.047977795400475816 0.04106948285977705 0.027970638427192183 0.02091205928752247 0.059654872512833565 0.047147090621259505
HLJG_1_GAGCGGTACTGTGCGAACAT 0.07228510321293827 0.023552091191015003 0.01613600766767188 0.022040209854349343 0.050358491366509696 0.03291150237460906
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